If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ), 'gf_id' => 'HOM05D000767', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000767' ), 'data_identifier' => 'HOM05D000767', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000767', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '765', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01990' => 'bna', 'A01p34150' => 'bna', 'A02p15270' => 'bna', 'A02p33480' => 'bna', 'A03p64750' => 'bna', 'A06p03790' => 'bna', 'A06p08440' => 'bna', 'A06p42520' => 'bna', 'A06p43100' => 'bna', 'A07p12670' => 'bna', 'A07p35090' => 'bna', 'A08p22490' => 'bna', 'A08p32360' => 'bna', 'A09p20620' => 'bna', 'A09p25020' => 'bna', 'A09p62300' => 'bna', 'Aa31LG10G4450' => 'aar', 'Aa31LG1G1450' => 'aar', 'Aa31LG2G6560' => 'aar', 'Aa31LG2G7110' => 'aar', 'Aa31LG6G13820' => 'aar', 'Aa31LG7G8950' => 'aar', 'Aa31sc1211G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3999' => 'aag', 'Actinidia00465' => 'ach', 'Actinidia09392' => 'ach', 'Actinidia12066' => 'ach', 'Actinidia12977' => 'ach', 'Actinidia14858' => 'ach', 'Actinidia16623' => 'ach', 'Actinidia17848' => 'ach', 'Actinidia20316' => 'ach', 'Actinidia27938' => 'ach', 'Actinidia36509' => 'ach', 'Ah.01g020060' => 'amhyb', 'Ah.02g127090' => 'amhyb', 'Ah.09g227620' => 'amhyb', 'AL1G25060' => 'aly', 'AL1G39750' => 'aly', 'AL1G56930' => 'aly', 'AL2G27590' => 'aly', 'AL3G47550' => 'aly', 'AL5G13260' => 'aly', 'AL5G14360' => 'aly', 'AL7G13980' => 'aly', 'Aqoxy3G00358' => 'aox', 'Aqoxy3G03925' => 'aox', 'Aqoxy6G00891' => 'aox', 'Aqoxy7G01947' => 'aox', 'arahy.Tifrunner.gnm1.ann1.25X103' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R8KAD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0TCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRY8GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQY6TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N32TVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USKV5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ5QJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2U02I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMGM97' => 'arhy', 'AT1G13300' => 'ath', 'AT1G25550' => 'ath', 'AT1G49560' => 'ath', 'AT1G68670' => 'ath', 'AT2G03500' => 'ath', 'AT3G25790' => 'ath', 'AT4G37180' => 'ath', 'ATR0083G005' => 'atr', 'ATR0767G080' => 'atr', 'ATR1100G033' => 'atr', 'Atru.chr11.1341' => 'acertr', 'Atru.chr3.425' => 'acertr', 'Atru.chr5.2816' => 'acertr', 'Atru.chr7.1267' => 'acertr', 'AUR62001964' => 'cqu', 'AUR62002914' => 'cqu', 'AUR62003842' => 'cqu', 'AUR62011050' => 'cqu', 'AUR62011426' => 'cqu', 'AUR62016634' => 'cqu', 'AUR62033426' => 'cqu', 'AUR62035274' => 'cqu', 'BcaB02g11093' => 'bca', 'BcaB03g14051' => 'bca', 'BcaB03g15830' => 'bca', 'BcaB05g24404' => 'bca', 'BcaB07g30296' => 'bca', 'BcaB07g30632' => 'bca', 'BcaB07g33666' => 'bca', 'BcaB08g34290' => 'bca', 'BcaC03g14977' => 'bca', 'BcaC03g17219' => 'bca', 'BcaC04g21418' => 'bca', 'BcaC05g25066' => 'bca', 'BcaC05g27486' => 'bca', 'BcaC06g31118' => 'bca', 'BcaC06g31178' => 'bca', 'BcaC06g33957' => 'bca', 'BcaC06g33992' => 'bca', 'BcaC06g35191' => 'bca', 'BcaC07g41582' => 'bca', 'BcaC07g41584' => 'bca', 'BcaC07g41653' => 'bca', 'BcaC08g43146' => 'bca', 'BcaC08g46320' => 'bca', 'BcaNung00755' => 'bca', 'BcaNung03514' => 'bca', 'BcaNung04272' => 'bca', 'BcaNung04514' => 'bca', 'BolC1t00208H' => 'bol', 'BolC1t00268H' => 'bol', 'BolC2t06741H' => 'bol', 'BolC2t08591H' => 'bol', 'BolC2t11235H' => 'bol', 'BolC3t20223H' => 'bol', 'BolC5t29752H' => 'bol', 'BolC5t31876H' => 'bol', 'BolC5t32177H' => 'bol', 'BolC6t35560H' => 'bol', 'BolC6t39307H' => 'bol', 'BolC7t42392H' => 'bol', 'BolC7t42470H' => 'bol', 'BolC7t43909H' => 'bol', 'BolC7t44000H' => 'bol', 'BolC8t49229H' => 'bol', 'BolC8t52136H' => 'bol', 'BolC8t52138H' => 'bol', 'BolC9t56055H' => 'bol', 'BraA01t00187Z' => 'bra', 'BraA02t06589Z' => 'bra', 'BraA02t08369Z' => 'bra', 'BraA03t09581Z' => 'bra', 'BraA03t11222Z' => 'bra', 'BraA03t15537Z' => 'bra', 'BraA06t23584Z' => 'bra', 'BraA06t24040Z' => 'bra', 'BraA06t27167Z' => 'bra', 'BraA07t29045Z' => 'bra', 'BraA08t34204Z' => 'bra', 'BraA08t35159Z' => 'bra', 'BraA09t38090Z' => 'bra', 'BraA09t41594Z' => 'bra', 'C01p02160' => 'bna', 'C01p02780' => 'bna', 'C02p08720' => 'bna', 'C02p25120' => 'bna', 'C02p51470' => 'bna', 'C03p79760' => 'bna', 'C04p19790' => 'bna', 'C04p52590' => 'bna', 'C05p10040' => 'bna', 'C05p31520' => 'bna', 'C05p34500' => 'bna', 'C06p04310' => 'bna', 'C06p41180' => 'bna', 'C07p18820' => 'bna', 'C07p19520' => 'bna', 'C07p33950' => 'bna', 'C07p34680' => 'bna', 'C08p16070' => 'bna', 'C08p45830' => 'bna', 'C08p45860' => 'bna', 'C08p46550' => 'bna', 'C09p32010' => 'bna', 'CAN.G322.35' => 'can', 'CAN.G377.37' => 'can', 'CAN.G674.47' => 'can', 'CAN.G836.55' => 'can', 'CANSAT01G2082' => 'cansat', 'CANSAT11G0245' => 'cansat', 'CANSAT25G0101' => 'cansat', 'CANSAT56G2067' => 'cansat', 'CANSAT64G0459' => 'cansat', 'CARHR013680' => 'chi', 'CARHR025900' => 'chi', 'CARHR025910' => 'chi', 'CARHR039600' => 'chi', 'CARHR061480' => 'chi', 'CARHR145840' => 'chi', 'CARHR146700' => 'chi', 'CARHR245330' => 'chi', 'Carub.0001s1303' => 'cru', 'Carub.0001s2493' => 'cru', 'Carub.0001s3876' => 'cru', 'Carub.0002s1521' => 'cru', 'Carub.0005s0245' => 'cru', 'Carub.0005s0362' => 'cru', 'Carub.0007s0337' => 'cru', 'Ca_18659_v3' => 'car', 'Ca_21717_v3' => 'car', 'Ca_24793_v3' => 'car', 'CBR_g3557' => 'cbr', 'Cc02_g18460' => 'ccan', 'Cc06_g09140' => 'ccan', 'Cc07_g05730' => 'ccan', 'Cc11_g10520' => 'ccan', 'CDE01G0545' => 'cde', 'CDE02G1983' => 'cde', 'CDE02G3499' => 'cde', 'CDE04G0353' => 'cde', 'CDE04G2000' => 'cde', 'CDE04G3182' => 'cde', 'CDE06G0827' => 'cde', 'CDE06G2221' => 'cde', 'CDE07G0001' => 'cde', 'CDE07G1294' => 'cde', 'CDE08G0199' => 'cde', 'Cfa005427' => 'cfa', 'Cfa010476' => 'cfa', 'Cfa018621' => 'cfa', 'Ciclev10008096m.g' => 'ccl', 'Ciclev10013589m.g' => 'ccl', 'Ciclev10026557m.g' => 'ccl', 'Ciclev10028556m.g' => 'ccl', 'Ciclev10031793m.g' => 'ccl', 'CiPaw.01G023300' => 'cil', 'CiPaw.03G237300' => 'cil', 'CiPaw.04G167800' => 'cil', 'CiPaw.05G055200' => 'cil', 'CiPaw.06G141100' => 'cil', 'CiPaw.14G096000' => 'cil', 'CiPaw.15G004100' => 'cil', 'CiPaw.16G003500' => 'cil', 'ClCG00G003380' => 'cla', 'ClCG01G016640' => 'cla', 'ClCG02G005680' => 'cla', 'ClCG05G022990' => 'cla', 'ClCG06G010560' => 'cla', 'ClCG08G005100' => 'cla', 'ClCG09G017540' => 'cla', 'ClCG11G002700' => 'cla', 'COL.COLO4_07878' => 'col', 'COL.COLO4_10663' => 'col', 'COL.COLO4_11362' => 'col', 'COL.COLO4_11721' => 'col', 'COL.COLO4_34972' => 'col', 'Cpa.g.sc1.213' => 'cpa', 'Cpa.g.sc127.55' => 'cpa', 'Cpa.g.sc14.230' => 'cpa', 'Cpa.g.sc14.231' => 'cpa', 'Cpa.g.sc6.397' => 'cpa', 'Cpa.g.sc62.51' => 'cpa', 'CsaV3_1G031040' => 'csa', 'CsaV3_2G002550' => 'csa', 'CsaV3_2G014190' => 'csa', 'CsaV3_5G034020' => 'csa', 'CsaV3_6G003320' => 'csa', 'CsaV3_6G043050' => 'csa', 'CsaV3_7G008830' => 'csa', 'CSS0003354' => 'camsi', 'CSS0006078' => 'camsi', 'CSS0007741' => 'camsi', 'CSS0007827' => 'camsi', 'CSS0014075' => 'camsi', 'CSS0014748' => 'camsi', 'CSS0031217' => 'camsi', 'CSS0031258' => 'camsi', 'CSS0031273' => 'camsi', 'CSS0044539' => 'camsi', 'CSS0044591' => 'camsi', 'CSS0045465' => 'camsi', 'CSS0049001' => 'camsi', 'DCAR_001619' => 'dca', 'DCAR_010924' => 'dca', 'DCAR_014854' => 'dca', 'DCAR_017856' => 'dca', 'DCAR_022065' => 'dca', 'DCAR_023678' => 'dca', 'DCAR_025704' => 'dca', 'DCAR_026719' => 'dca', 'Dinv06187' => 'din', 'Dinv16502' => 'din', 'Dinv21124' => 'din', 'Dinv23593' => 'din', 'Dinv29955' => 'din', 'Dinv36588' => 'din', 'Dinv39893' => 'din', 'Dinv41557' => 'din', 'Dinv42123' => 'din', 'Duzib052G0033' => 'dzi', 'Duzib133G1007' => 'dzi', 'Duzib150G0837' => 'dzi', 'Duzib168G0902' => 'dzi', 'Duzib187G0123' => 'dzi', 'Duzib187G0547' => 'dzi', 'Duzib248G0094' => 'dzi', 'Duzib248G1037' => 'dzi', 'Duzib251G0675' => 'dzi', 'Duzib264G0336' => 'dzi', 'Duzib268G1649' => 'dzi', 'ECA233G3793' => 'eca', 'ECA234G2896' => 'eca', 'ECA234G4102' => 'eca', 'ECA236G2434' => 'eca', 'ECA240G1352' => 'eca', 'ECA240G1427' => 'eca', 'EL10Ac6g14468' => 'bvu', 'EL10Ac8g18569' => 'bvu', 'EL10Ac9g21820' => 'bvu', 'Eucgr.B03044' => 'egr', 'Eucgr.C04155' => 'egr', 'Eucgr.G01503' => 'egr', 'Eucgr.G02343' => 'egr', 'Eucgr.H01993' => 'egr', 'Eucgr.I01178' => 'egr', 'FAN07G1023' => 'fan', 'FAN09G4755' => 'fan', 'FAN12G0286' => 'fan', 'FAN15G3639' => 'fan', 'FAN17G0808' => 'fan', 'FAN19G1657' => 'fan', 'FAN19G1746' => 'fan', 'FAN20G1815' => 'fan', 'FAN22G2012' => 'fan', 'FAN23G0216' => 'fan', 'FAN24G1721' => 'fan', 'FAN26G0594' => 'fan', 'FAN26G2914' => 'fan', 'FAN27G3373' => 'fan', 'FAN28G2559' => 'fan', 'FAN28G3028' => 'fan', 'FvH4_1g04130' => 'fve', 'FvH4_1g15450' => 'fve', 'FvH4_1g15470' => 'fve', 'FvH4_2g06880' => 'fve', 'FvH4_4g27990' => 'fve', 'FvH4_6g46323' => 'fve', 'Glyma.01G086700' => 'gma', 'Glyma.01G183700' => 'gma', 'Glyma.02G098800' => 'gma', 'Glyma.02G135400' => 'gma', 'Glyma.04G151000' => 'gma', 'Glyma.05G011500' => 'gma', 'Glyma.05G081700' => 'gma', 'Glyma.06G213400' => 'gma', 'Glyma.07G178500' => 'gma', 'Glyma.07G209500' => 'gma', 'Glyma.10G204200' => 'gma', 'Glyma.11G058600' => 'gma', 'Glyma.17G119600' => 'gma', 'Glyma.17G178500' => 'gma', 'Glyma.20G009800' => 'gma', 'Glyma.20G186500' => 'gma', 'Gohir.A02G160000' => 'ghi', 'Gohir.A04G121000' => 'ghi', 'Gohir.A04G125706' => 'ghi', 'Gohir.A05G020700' => 'ghi', 'Gohir.A06G059150' => 'ghi', 'Gohir.A07G002600' => 'ghi', 'Gohir.A07G002650' => 'ghi', 'Gohir.A07G078900' => 'ghi', 'Gohir.A07G078950' => 'ghi', 'Gohir.A07G179200' => 'ghi', 'Gohir.A11G045800' => 'ghi', 'Gohir.A12G026400' => 'ghi', 'Gohir.A12G069600' => 'ghi', 'Gohir.A12G169700' => 'ghi', 'Gohir.A13G037600' => 'ghi', 'Gohir.A13G053414' => 'ghi', 'Gohir.D01G114750' => 'ghi', 'Gohir.D03G020100' => 'ghi', 'Gohir.D03G054400' => 'ghi', 'Gohir.D04G162500' => 'ghi', 'Gohir.D05G021800' => 'ghi', 'Gohir.D05G262150' => 'ghi', 'Gohir.D06G057401' => 'ghi', 'Gohir.D07G002900' => 'ghi', 'Gohir.D07G084000' => 'ghi', 'Gohir.D07G084100' => 'ghi', 'Gohir.D07G186100' => 'ghi', 'Gohir.D11G045566' => 'ghi', 'Gohir.D11G049400' => 'ghi', 'Gohir.D12G026000' => 'ghi', 'Gohir.D12G089600' => 'ghi', 'Gohir.D12G173000' => 'ghi', 'Gohir.D13G035900' => 'ghi', 'Gohir.D13G070000' => 'ghi', 'Gorai.001G002800' => 'gra', 'Gorai.001G089700' => 'gra', 'Gorai.001G089800' => 'gra', 'Gorai.001G158700' => 'gra', 'Gorai.001G206600' => 'gra', 'Gorai.001G210000' => 'gra', 'Gorai.002G140300' => 'gra', 'Gorai.003G021300' => 'gra', 'Gorai.007G053100' => 'gra', 'Gorai.007G082100' => 'gra', 'Gorai.008G026300' => 'gra', 'Gorai.008G073300' => 'gra', 'Gorai.008G185500' => 'gra', 'Gorai.009G022100' => 'gra', 'Gorai.010G067300' => 'gra', 'Gorai.012G150500' => 'gra', 'Gorai.013G040600' => 'gra', 'Gorai.013G080200' => 'gra', 'GSVIVG01003551001' => 'vvi', 'GSVIVG01011942001' => 'vvi', 'GSVIVG01015462001' => 'vvi', 'GSVIVG01031804001' => 'vvi', 'HanXRQChr03g0062161' => 'han', 'HanXRQChr03g0072181' => 'han', 'HanXRQChr08g0214321' => 'han', 'HanXRQChr09g0240781' => 'han', 'HanXRQChr10g0303201' => 'han', 'HanXRQChr12g0364741' => 'han', 'HanXRQChr12g0374531' => 'han', 'HanXRQChr15g0495721' => 'han', 'HanXRQChr15g0495731' => 'han', 'HanXRQChr16g0505181' => 'han', 'HanXRQChr16g0529111' => 'han', 'HanXRQChr17g0567951' => 'han', 'Haze_01883' => 'cav', 'Haze_15445' => 'cav', 'Haze_17448' => 'cav', 'Haze_25660' => 'cav', 'Hma1.2p1_0018F.1_g012990' => 'hma', 'Hma1.2p1_0584F.1_g183140' => 'hma', 'Hma1.2p1_0862F.1_g229940' => 'hma', 'Hma1.2p1_0873F.1_g231250' => 'hma', 'Hma1.2p1_0873F.1_g231260' => 'hma', 'Hma1.2p1_1589F.1_g292385' => 'hma', 'Hma1.2p1_3028F.1_g331835' => 'hma', 'Hma1.2p1_3028F.1_g331840' => 'hma', 'HPP92_017767' => 'vpl', 'HPP92_018723' => 'vpl', 'HPP92_019606' => 'vpl', 'HPP92_019958' => 'vpl', 'HPP92_019969' => 'vpl', 'HPP92_019975' => 'vpl', 'HPP92_020040' => 'vpl', 'HPP92_021801' => 'vpl', 'Hund00319' => 'sun', 'Hund05760' => 'sun', 'Hund06187' => 'sun', 'Hund09165' => 'sun', 'Hund13579' => 'sun', 'Hund16312' => 'sun', 'Hund25096' => 'sun', 'Lalb_Chr02g0151731' => 'lal', 'Lalb_Chr05g0218981' => 'lal', 'Lalb_Chr08g0234941' => 'lal', 'Lalb_Chr10g0099821' => 'lal', 'Lalb_Chr12g0197671' => 'lal', 'Lalb_Chr13g0302201' => 'lal', 'Lalb_Chr13g0302211' => 'lal', 'Lalb_Chr16g0384531' => 'lal', 'Lalb_Chr16g0388401' => 'lal', 'Lalb_Chr17g0341931' => 'lal', 'Lalb_Chr21g0313321' => 'lal', 'Lj2g0003589' => 'lja', 'Lj2g0021880' => 'lja', 'Lj3A1019T28' => 'lonja', 'Lj4A138T48' => 'lonja', 'Lj4g0005628' => 'lja', 'Lj4g0013176' => 'lja', 'Lj4g0019112' => 'lja', 'Lj5g0011154' => 'lja', 'Lj7A637T72' => 'lonja', 'Lj9A361T57' => 'lonja', 'Lsat_1_v5_gn_2_91401' => 'lsa', 'Lsat_1_v5_gn_4_168621' => 'lsa', 'Lsat_1_v5_gn_4_20080' => 'lsa', 'Lsat_1_v5_gn_5_117761' => 'lsa', 'Lsat_1_v5_gn_7_42681' => 'lsa', 'Lsat_1_v5_gn_7_87680' => 'lsa', 'Lsat_1_v5_gn_8_38620' => 'lsa', 'Lsat_1_v5_gn_9_108901' => 'lsa', 'Manes.01G103800' => 'mes', 'Manes.06G060000' => 'mes', 'Manes.06G071500' => 'mes', 'Manes.12G093900' => 'mes', 'Manes.13G128300' => 'mes', 'Manes.14G098400' => 'mes', 'Manes.14G127500' => 'mes', 'Manes.15G143500' => 'mes', 'Manes.17G094500' => 'mes', 'Mapoly0119s0041' => 'mpo', 'MBI04_g43149_MAGBIO' => 'mbi', 'MBI09_g05204_MAGBIO' => 'mbi', 'MBI16_g19913_MAGBIO' => 'mbi', 'MBI16_g24705_MAGBIO' => 'mbi', 'MBI16_g25110_MAGBIO' => 'mbi', 'MD02G1039800' => 'mdo', 'MD02G1166700' => 'mdo', 'MD05G1074600' => 'mdo', 'MD08G1047900' => 'mdo', 'MD10G1089300' => 'mdo', 'MD11G1104500' => 'mdo', 'MD13G1045700' => 'mdo', 'MD15G1180700' => 'mdo', 'MD15G1279200' => 'mdo', 'MD16G1047300' => 'mdo', 'MD17G1066200' => 'mdo', 'Medtr1g093080' => 'mtr', 'Medtr4g086835' => 'mtr', 'Medtr4g113140' => 'mtr', 'Medtr5g017980' => 'mtr', 'Medtr5g054300' => 'mtr', 'MELO3C004535.2' => 'cme', 'MELO3C007540.2' => 'cme', 'MELO3C011546.2' => 'cme', 'MELO3C012218.2' => 'cme', 'MELO3C018430.2' => 'cme', 'MELO3C021917.2' => 'cme', 'MELO3C025295.2' => 'cme', 'Migut.B00308' => 'egut', 'Migut.E00311' => 'egut', 'Migut.H00466' => 'egut', 'Migut.H01532' => 'egut', 'Migut.K00828' => 'egut', 'Migut.L01092' => 'egut', 'Migut.N01205' => 'egut', 'MSTRG.13168' => 'ama', 'MSTRG.13507' => 'ama', 'MSTRG.14663' => 'ama', 'MSTRG.20135' => 'ama', 'MSTRG.2256' => 'ama', 'MSTRG.23777' => 'ama', 'MSTRG.27717' => 'ama', 'MSTRG.2904' => 'ama', 'MSTRG.5370' => 'ama', 'MSTRG.819' => 'ama', 'Nitab4.5_0000440g0010' => 'nta', 'Nitab4.5_0000672g0080' => 'nta', 'Nitab4.5_0000736g0030' => 'nta', 'Nitab4.5_0001164g0090' => 'nta', 'Nitab4.5_0002462g0050' => 'nta', 'Nitab4.5_0003726g0010' => 'nta', 'Nitab4.5_0005194g0010' => 'nta', 'Nitab4.5_0008336g0010' => 'nta', 'Nitab4.5_0012578g0010' => 'nta', 'Nn2g11874' => 'nnu', 'Nn2g13419' => 'nnu', 'Nn3g17763' => 'nnu', 'Nn4g23748' => 'nnu', 'Nn5g29346' => 'nnu', 'Nn6g32084' => 'nnu', 'Nn8g39325' => 'nnu', 'Oeu004596.1' => 'oeu', 'Oeu004878.1' => 'oeu', 'Oeu007251.1' => 'oeu', 'Oeu009121.1' => 'oeu', 'Oeu010584.1' => 'oeu', 'Oeu013675.1' => 'oeu', 'Oeu018446.1' => 'oeu', 'Oeu021847.1' => 'oeu', 'Oeu036690.1' => 'oeu', 'Oeu041883.1' => 'oeu', 'Oeu041885.1' => 'oeu', 'Oeu042040.1' => 'oeu', 'Oeu049301.1' => 'oeu', 'Oeu049302.1' => 'oeu', 'Oeu050749.1' => 'oeu', 'Oeu053759.1' => 'oeu', 'Os01g0176700' => 'osa', 'Os02g0325600' => 'osa', 'Os03g0241001' => 'osa', 'Os03g0764600' => 'osa', 'Os07g0119300' => 'osa', 'Os12g0586300' => 'osa', 'Peaxi162Scf00016g01526' => 'pax', 'Peaxi162Scf00380g00618' => 'pax', 'Peaxi162Scf00684g00572' => 'pax', 'Peaxi162Scf00984g00245' => 'pax', 'Peaxi162Scf00993g00033' => 'pax', 'PGR042G1086' => 'pgr', 'PGR102G0627' => 'pgr', 'PGR102G3257' => 'pgr', 'PGR119G0636' => 'pgr', 'PGSC0003DMG400000828' => 'stu', 'PGSC0003DMG400010067' => 'stu', 'PGSC0003DMG400025801' => 'stu', 'PGSC0003DMG400030389' => 'stu', 'Phvul.002G021400' => 'pvu', 'Phvul.003G012400' => 'pvu', 'Phvul.003G028000' => 'pvu', 'Phvul.003G159800' => 'pvu', 'Phvul.003G246900' => 'pvu', 'Phvul.003G293800' => 'pvu', 'Phvul.007G102900' => 'pvu', 'Phvul.009G199700' => 'pvu', 'Potri.004G144800' => 'ptr', 'Potri.005G134600' => 'ptr', 'Potri.006G155200' => 'ptr', 'Potri.007G039400' => 'ptr', 'Potri.008G117500' => 'ptr', 'Potri.009G106600' => 'ptr', 'Potri.010G128900' => 'ptr', 'Potri.018G074200' => 'ptr', 'Pp3c15_4480' => 'ppa', 'Pp3c20_11430' => 'ppa', 'Pp3c9_8580' => 'ppa', 'Prupe.1G306300' => 'ppe', 'Prupe.3G248500' => 'ppe', 'Prupe.4G176800' => 'ppe', 'Prupe.7G138100' => 'ppe', 'Prupe.7G235900' => 'ppe', 'Prupe.8G116200' => 'ppe', 'Psat1g089400' => 'psa', 'Psat2g164920' => 'psa', 'Psat2g164960' => 'psa', 'Psat2g165000' => 'psa', 'Psat4g042280' => 'psa', 'Psat6g178160' => 'psa', 'Psat7g124080' => 'psa', 'PSO017G4110' => 'pso', 'PSO017G6722' => 'pso', 'PSO063G1878' => 'pso', 'PSO170G3624' => 'pso', 'PSO170G5083' => 'pso', 'PSO339G2558' => 'pso', 'PSO349G0118' => 'pso', 'PSO541G5152' => 'pso', 'PSO675G5138' => 'pso', 'PSO700G0389' => 'pso', 'QL01p044829' => 'qlo', 'QL02p086593' => 'qlo', 'QL11p038365' => 'qlo', 'RcHm_v2.0_Chr2g0089601' => 'rch', 'RcHm_v2.0_Chr2g0104701' => 'rch', 'RcHm_v2.0_Chr4g0435701' => 'rch', 'RcHm_v2.0_Chr6g0259191' => 'rch', 'Rhsim01G0089500' => 'rsi', 'Rhsim08G0104100' => 'rsi', 'Rhsim09G0111400' => 'rsi', 'Rhsim11G0169200' => 'rsi', 'Sabra04G0096100' => 'sbr', 'Sabra05G0108300' => 'sbr', 'Sabra06G0122900' => 'sbr', 'Sabra07G0035600' => 'sbr', 'Sabra08G0089100' => 'sbr', 'Sabra09G0081400' => 'sbr', 'Sabra10G0098000' => 'sbr', 'Sabra18G0062900' => 'sbr', 'SalBow1G8441' => 'sbo', 'SalBow3G4131' => 'sbo', 'SalBow6G5555' => 'sbo', 'SalBow7G2041' => 'sbo', 'SalBow7G2107' => 'sbo', 'SalBow8G1822' => 'sbo', 'SalBow8G1915' => 'sbo', 'SalBow8G4356' => 'sbo', 'SalBow8G5444' => 'sbo', 'Sc04g0006650' => 'sci', 'Sc08g0006980' => 'sci', 'Sc11g0003160' => 'sci', 'Sc16g0001600' => 'sci', 'Sc18g0004910' => 'sci', 'Sc18g0004920' => 'sci', 'Sed0001041' => 'sed', 'Sed0002499' => 'sed', 'Sed0003124' => 'sed', 'Sed0004926' => 'sed', 'Sed0010552' => 'sed', 'Sed0010582' => 'sed', 'Sed0013905' => 'sed', 'Sed0014412' => 'sed', 'Sed0021785' => 'sed', 'Sed0026290' => 'sed', 'SEGI_04195' => 'sgi', 'SEGI_33316' => 'sgi', 'SGA_v2.0_scaffold14G06837' => 'sas', 'SGA_v2.0_scaffold159G37702' => 'sas', 'SGA_v2.0_scaffold15G07246' => 'sas', 'SGA_v2.0_scaffold15G07249' => 'sas', 'SGA_v2.0_scaffold170G38746' => 'sas', 'SGA_v2.0_scaffold204G41594' => 'sas', 'SGA_v2.0_scaffold204G41596' => 'sas', 'SGA_v2.0_scaffold32G13113' => 'sas', 'SGA_v2.0_scaffold58G20606' => 'sas', 'SGA_v2.0_scaffold753G53553' => 'sas', 'SHI03683' => 'shi', 'SHI03690' => 'shi', 'SMO351G0476' => 'smo', 'SMO367G1296' => 'smo', 'Solyc01g108300.3' => 'sly', 'Solyc02g090400.4' => 'sly', 'Solyc05g009720.3' => 'sly', 'Solyc12g006800.2' => 'sly', 'Sopen01g050520' => 'spe', 'Sopen02g035100' => 'spe', 'Sopen05g005540' => 'spe', 'Sopen12g002760' => 'spe', 'Sp1g11810' => 'spa', 'Sp1g22660' => 'spa', 'Sp1g36430' => 'spa', 'Sp2g14400' => 'spa', 'Sp2g15030' => 'spa', 'Sp5g23770' => 'spa', 'Sp7g34610' => 'spa', 'TAR371G0985' => 'tar', 'TAR376G0061' => 'tar', 'TAR381G0935' => 'tar', 'TAR462G0002' => 'tar', 'TAR573G0002' => 'tar', 'TAR622G0860' => 'tar', 'TAR625G1115' => 'tar', 'TAR628G1093' => 'tar', 'TAR636G2138' => 'tar', 'THA.LOC104798801' => 'tha', 'THA.LOC104804217' => 'tha', 'THA.LOC104804876' => 'tha', 'THA.LOC104805248' => 'tha', 'THA.LOC104807573' => 'tha', 'THA.LOC104808201' => 'tha', 'THA.LOC104809012' => 'tha', 'THA.LOC104814135' => 'tha', 'THA.LOC104821960' => 'tha', 'THA.LOC104824036' => 'tha', 'THA.LOC104825708' => 'tha', 'Thecc.01G050700' => 'tca', 'Thecc.02G095600' => 'tca', 'Thecc.02G360000' => 'tca', 'Thecc.04G107200' => 'tca', 'Thecc.04G107400' => 'tca', 'Thecc.09G118200' => 'tca', 'Thhalv10004257m.g' => 'esa', 'Thhalv10004475m.g' => 'esa', 'Thhalv10008054m.g' => 'esa', 'Thhalv10008115m.g' => 'esa', 'Thhalv10011605m.g' => 'esa', 'Thhalv10018737m.g' => 'esa', 'Thhalv10025593m.g' => 'esa', 'Thhalv10027099m.g' => 'esa', 'TPR.G11354' => 'tpr', 'TPR.G16272' => 'tpr', 'TPR.G18700' => 'tpr', 'TPR.G26756' => 'tpr', 'TPR.G38347' => 'tpr', 'TPR.G7226' => 'tpr', 'TWI09G0736' => 'twi', 'TWI09G1285' => 'twi', 'TWI23G0781' => 'twi', 'TWI31G0414' => 'twi', 'TWI31G1259' => 'twi', 'TWI34G1551' => 'twi', 'TWI34G1839' => 'twi', 'TWI73G0247' => 'twi', 'TWI75G1680' => 'twi', 'TWI79G0305' => 'twi', 'unitig_21.g20229' => 'ugi', 'unitig_22.g5187' => 'ugi', 'unitig_22.g6549' => 'ugi', 'unitig_26.g10241' => 'ugi', 'unitig_27.g25244' => 'ugi', 'unitig_699.g19516' => 'ugi', 'unitig_699.g19894' => 'ugi', 'unitig_744.g24529' => 'ugi', 'vmacro02173' => 'vma', 'vmacro10535' => 'vma', 'vmacro20683' => 'vma', 'vmacro23164' => 'vma', 'VMungo0251G0063' => 'vmu', 'VMungo0251G0178' => 'vmu', 'VMungo0720G1026' => 'vmu', 'VMungo1215G0175' => 'vmu', 'VMungo1215G1284' => 'vmu', 'VMungo1215G2583' => 'vmu', 'VMungo1215G3446' => 'vmu', 'VMungo1309G0887' => 'vmu', 'Zm00001eb030400' => 'zma', 'Zm00001eb058460' => 'zma', 'Zm00001eb118010' => 'zma', 'Zm00001eb122550' => 'zma', 'Zm00001eb214190' => 'zma', 'Zm00001eb298990' => 'zma' ) $gf_id = 'HOM05D000767' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000767' ) $data_identifier = 'HOM05D000767' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 27, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 34, 'gra' => (int) 18, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298990' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1